Overview
Black Canyon Consulting (BCC) is searching for a Software Developer (Python) to support the National Center for Biotechnology Information (NCBI).
The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM) at the National Institutes of Health (NIH). NCBI is the world’s premier biomedical center hosting over six million daily users that seek research, clinical, genetic, and other information that directly impacts biomedical research and public health – at NCBI you can literally help to accelerate cures for diseases! NCBI’s wide range of applications, platforms (node, python, Django, C++, you name it) and environments (big data [petabytes], machine learning, multiple clouds) serve more users than almost any other US Government Agency according to https://analytics.usa.gov/.
We attract the best people in the business with our competitive benefits package that includes medical, dental and vision coverage, 401k plan with employer contribution, paid holidays, vacation, and tuition reimbursement. If you enjoy being a part of a high performing, professional service and technology focused organization, please apply today!
Job Description
The Jr Software Developer will work on implementation the indexing recommendations of the MEDLINE 2022 Steering Committee for PubMed – free resource supporting the search and retrieval of biomedical and life sciences literature with the aim of improving health – both globally and personally. Position focused on running and improving the NLM Medical Text Indexer (MTI) pipeline which maps citation text to concepts in Medical Subject Headings (MeSH) to facilitate the retrieval of biomedical information in PubMed.
Required Skills
- 2+ years of relevant Computer Programming experience in a Linux environment
- Proficiency in the "C" programming language
- Fluency in at least one of the following scripting languages: bash, sh, csh, or tsh
- Experience with open source projects and source version control software
Desired Skills
- Experience working with genetic and biological data
- Experience with Java and/or Python programming languages
- Experience with RDBMS such as MySQL or Berkeley DB
- Experience with PubMed Eutils interface
- Experience with MeSH Vocabulary
- Experience with CI/CD pipelines, unit tests, integration and regression testing, source version control (Git, GitHub, Subversion)
- Experience working within a Cloud environment
Job Responsibilities
- Be able to work autonomously
- Responsible for updating, maintaining, and fixing the NLM Medical Text Indexer (MTI) software and related databases.
- Work with a diverse group of scientists, bioinformaticians and other developers across the center to implement efficient bioinformatics algorithms and to further advance the usefulness of Automatic Indexing.
- Learn new technologies, keep up with the internal systems, and share your knowledge with the team.
